PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G132400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 398aa    MW: 41121.6 Da    PI: 9.4712
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G132400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.71.2e-3887147262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GGalr vPvGgg+r+nk+s+
  Brast02G132400.1.p  87 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSK 147
                         67899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3572140IPR003851Zinc finger, Dof-type
PfamPF027019.5E-3390145IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.55391145IPR003851Zinc finger, Dof-type
PROSITE patternPS01361093129IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVFPSVPAYL DPPNWNNQQG QQPRASGAGS GGSSAGDAAL QHVPVGPAAA ALAGNEAAGP  60
QQQQQQQARA NPHSMTERAR MARAPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKA  120
CRRYWTRGGA LRSVPVGGGC RRNKRSKSKP SSSSSASSRQ QLPGGAAASS SMPSTAPGSG  180
VAMIPPVGLG SSMAHHLPFL GTMQQHAPGA GPGLGLAFSV GLPPLGIGIG MHQQQQQHMD  240
GVDQSSFPLA SGGGAATFGA SLEQQWRVHQ QQQFPFLELP PPPPPGPPMY QLGALQGNRA  300
GAAPSGMFTL GQTATAARHE RTSVKQLADD DDSKGGQEMS LQRQYMEALR QQAGDQGVWG  360
GSGNGADDGN GSGSSWTMNL PGFHSSSTGD HGGGGLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G132400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839421e-83AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1376981e-83AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence.
GenBankAP0149591e-83AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-83CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561779.11e-155dof zinc finger protein DOF5.1
TrEMBLI1H6Y41e-153I1H6Y4_BRADI; Uncharacterized protein
STRINGBRADI1G66597.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123012432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.13e-38Dof family protein