PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G135300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 187aa    MW: 19694.5 Da    PI: 9.053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G135300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00135880123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+++F++   L  H  +H
  Brast02G135300.1.p 58 FECKTCSRRFPSFQALGGHRASH 80
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.24E-856122No hitNo description
PfamPF139124.1E-135782IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7855885IPR007087Zinc finger, C2H2
SMARTSM003550.275880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
PfamPF139122.7E-999124IPR007087Zinc finger, C2H2
PROSITE profilePS501578.559100127IPR007087Zinc finger, C2H2
SMARTSM003552.9100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAHGKRSRQQ AEARGVSLLD LDSGDMARIL MLFSGQHHIE LQHGFAAQPS SSSPERVFEC  60
KTCSRRFPSF QALGGHRASH KKPRLADDGA QPEQPKPKVH GCSVCGLEFA VGQALGGHMR  120
RHRAAVAQSG LGLGLGLGLG LGPKDGGGKK TAHAAAELAL DLNVPALEEE PELAAGLFPV  180
VVDFRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G135300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228788.11e-87zinc finger protein ZAT11
TrEMBLI1H6V43e-86I1H6V4_BRADI; Uncharacterized protein
STRINGBRADI1G66330.15e-87(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-26C2H2 family protein