PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G141700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 197aa    MW: 21002.8 Da    PI: 5.5716
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G141700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.85e-40291281100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+lapyfp ++p+kf  +h++FGasn++kll++lpe  r da+ss+vyeAearardPvyG++g + +lq++ ++lk
  Brast02G141700.1.p  29 PCAACKLLRRRCADGCMLAPYFPPTDPAKFTTAHRVFGASNIIKLLQELPEGARADAVSSMVYEAEARARDPVYGCAGAVCRLQEEANELK 119
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         + la++++ 
  Brast02G141700.1.p 120 VRLARAQAD 128
                         ***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.98228129IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-4029126IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEYSKEATNT ASSSSCSPPP APAAVVLSPC AACKLLRRRC ADGCMLAPYF PPTDPAKFTT  60
AHRVFGASNI IKLLQELPEG ARADAVSSMV YEAEARARDP VYGCAGAVCR LQEEANELKV  120
RLARAQADLL SAQAQHASLL ALACVELAHH GRGVVAEQQQ PPLGGSDLDH HGGALYQPFY  180
DSDLDLAPWE ETRLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-402814810120LOB family transfactor Ramosa2.1
5ly0_B8e-402814810120LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G141700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0725151e-118AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence.
GenBankCT8321431e-118CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561741.12e-97LOB domain-containing protein 1
SwissprotQ9LQR08e-59LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK083e-58LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A287P7F43e-96A0A287P7F4_HORVV; Uncharacterized protein
STRINGBRADI1G65760.16e-97(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-46LOB domain-containing protein 1