PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G145600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 260aa MW: 27818.3 Da PI: 10.1996

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G145600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.8	1.3e-08	21	95	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr 71 Wt+ e+ aL+ea ++ r + g l+ ++W++ ++++ +++ r+ qCk++++ l+kr ++++ + ++ Brast02G145600.1.p 21 WTDGETSALLEAWGPRHLRAGGGPLRTADWRACAAAVtarraAAGRAPRTVDQCKNRMDYLKKRLRAERSRPRGA 95 ***********************************9999888889*****************999887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.1E-13	20	94	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MPATRRRRPS PPLPAWTPEP WTDGETSALL EAWGPRHLRA GGGPLRTADW RACAAAVTAR 60 RAAAGRAPRT VDQCKNRMDY LKKRLRAERS RPRGASPPPP PLSGSLGRLR KLLSQAPSVP 120 HGLAPRVPAA PKSEEEDGDD DDDEGEQNGG APLHRDWPPV PKRRRTAVSL SPVSSSAEGH 180 HHENGGVGCT EVAAALDRLA GTYERVEAAK QKEAARLEER RLEAMRDLEI GRMRVLVDVA 240 IPTSADTDKA AAAATPAAA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G145600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003561731.1	1e-121	uncharacterized protein LOC100838657
TrEMBL	A0A287P551	1e-116	A0A287P551_HORVV; Uncharacterized protein
STRING	BRADI1G65400.1	1e-120	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14022	13	13

Link Out ? help Back to Top
Phytozome	Brast02G145600.1.p