PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G162800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 210aa    MW: 23375.9 Da    PI: 8.0142
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G162800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.31e-203394259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                        +Dg++WrKYG K++++ +fpr YYrCt++   +Cp++k+++++ ++dp + ++tY +eH ++
  Brast02G162800.1.p 33 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKdHSDPPLYQVTYYNEHSCN 94
                        8***************************99999*******875267*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-231994IPR003657WRKY domain
SuperFamilySSF1182906.93E-222694IPR003657WRKY domain
PROSITE profilePS5081115.8472796IPR003657WRKY domain
SMARTSM007741.9E-303295IPR003657WRKY domain
PfamPF031063.7E-243393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSPVPSPHQS HLLGHGTRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY  60
KDNMNCPATK QIQQKDHSDP PLYQVTYYNE HSCNSAFLAL TPTEFQLQTA SGKAVSICFD  120
SSGAQEPAAN ASSPSSSAAP RGTPSENKNQ TLRLSEAHSS WGPSVIEQKQ VCTELQSCST  180
ECQDAYSAGT ISEDIDAGRF GSIRFFHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-143393968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G162800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945130.0FP094513.1 Phyllostachys edulis cDNA clone: bphyst007p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558024.11e-156probable WRKY transcription factor 54
TrEMBLI1H6101e-155I1H610_BRADI; Uncharacterized protein
STRINGBRADI1G63910.11e-156(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-18WRKY DNA-binding protein 46