PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G163500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 216aa    MW: 23387.3 Da    PI: 9.9563
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G163500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.24e-14145187547
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                         +r +r++kNRe+A rsR+RK+a++ eLe+k+  Le+eN+ L++
  Brast02G163500.1.p 145 RRKKRMIKNRESAARSRARKQAYTNELENKISRLEEENELLRS 187
                         6899**********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-11141213IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.082143187IPR004827Basic-leucine zipper domain
PfamPF001705.4E-12145187IPR004827Basic-leucine zipper domain
CDDcd147079.05E-21145186No hitNo description
SuperFamilySSF579593.06E-11145187No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-14145187No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGTQAMSSGG AISRQGSVCS LTLSEVEGQL HGVNLDDLLR TAGSARKTAD EVWPDIHGGR  60
APGQMTLEDF LSKPVGDARW AEQYNPAPPA QGHSVGRPLP RPLGVGAGPV LDALLCHDGA  120
AAPFNGRKRA AEAGLGGPGE KTVERRKKRM IKNRESAARS RARKQAYTNE LENKISRLEE  180
ENELLRSYKA FEPVVHYVPQ EEPKNQLRRR NSASF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126147RKRAAEAGLGGPGEKTVERRKK
2126148RKRAAEAGLGGPGEKTVERRKKR
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G163500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614235e-90AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558020.11e-132ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9C5Q23e-34AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
SwissprotQ9LES35e-34AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A0Q3LFY51e-130A0A0Q3LFY5_BRADI; Uncharacterized protein
STRINGBRADI1G63840.11e-127(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.33e-31bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  4. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]