PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G171400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 328aa    MW: 33744 Da    PI: 5.2009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G171400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.95.7e-25107167259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg+ WrKYGqKe+++s++prsYYrCt++   gC +k++v++++ dp+   +tY geH+++
  Brast02G171400.1.p 107 VDGHVWRKYGQKEIQNSPHPRSYYRCTHKsdrGCDAKRQVQTCEADPSKYAVTYYGEHTCR 167
                         59**************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.446101164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-26102167IPR003657WRKY domain
SuperFamilySSF1182901.96E-23104167IPR003657WRKY domain
SMARTSM007741.1E-33106168IPR003657WRKY domain
PfamPF031061.4E-24108167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MATSGGAGKD VPAERAAAAV NDLIEVREGA ARLKSLLQEQ SSEWAELIDA MLSKLSSALS  60
ALDTGASADG VIRQTAAAES SAGRTRKRSS CRRSQGSSGK RVTDTLVDGH VWRKYGQKEI  120
QNSPHPRSYY RCTHKSDRGC DAKRQVQTCE ADPSKYAVTY YGEHTCRDYS PSSAAQMIIV  180
AAAACDEDDL ATNNLVSFAQ TSPRQLAKEE GAVVAASRMS SPWCTTSVDD VFSSSADPFV  240
RAADDELAAV VVGSASAGRT SSTVGSAAPD HGGLGDVAGL AGAGLHGGDG GTAAGTDSFA  300
TSSPSSLGFR VGSLGSIGGD DFFLFDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-27102167469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G171400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228655.11e-152probable WRKY transcription factor 70
TrEMBLA0A0Q3JWU91e-150A0A0Q3JWU9_BRADI; Uncharacterized protein
STRINGBRADI1G63220.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-21WRKY DNA-binding protein 46