PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G204800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 207aa    MW: 24265.1 Da    PI: 7.8137
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G204800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-14112198599
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++++++ ++++l +p +f +eh   +e +  ++l d +  +++  +  r + ++  l kGWkeF+ +++L +gD +vF+l+++    ++v 
  Brast02G204800.1.p 112 FVRPMTQNLSNLHIPSQFSTEHL--PEHDARISLVDDEEDEYRTFY--RAQTSS--LNKGWKEFAVDHELVDGDCLVFQLIKKAF--FKVY 194
                         56677888899***********4..335568***************..555544..************************99555..5999 PP

                         EE-S CS
                  B3  96 vfrk 99 
                         +fr+
  Brast02G204800.1.p 195 IFRA 198
                         9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-19105199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-19106199IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.857108199IPR003340B3 DNA binding domain
CDDcd100172.45E-19110197No hitNo description
PfamPF023626.2E-12112198IPR003340B3 DNA binding domain
SMARTSM010192.7E-15112199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAEVNSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAATK PKQKRKAPAQ QEAGKDAPRR  60
RSDRIANIPE RPNYRDKAMK SRKQKELKPD HAYAITKAEE LQDELGSDYP TFVRPMTQNL  120
SNLHIPSQFS TEHLPEHDAR ISLVDDEEDE YRTFYRAQTS SLNKGWKEFA VDHELVDGDC  180
LVFQLIKKAF FKVYIFRASS YYEDDH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G204800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228540.21e-133B3 domain-containing protein Os06g0194400
RefseqXP_014752375.21e-133B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-76Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A0Q3KAF81e-133A0A0Q3KAF8_BRADI; Uncharacterized protein
STRINGBRADI1G60530.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-33B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]