PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G213200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 199aa    MW: 20509.2 Da    PI: 8.691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G213200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000645981123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C  Cgk F +   L  H ++H
  Brast02G213200.1.p 59 FRCMVCGKAFASYQALGGHKSSH 81
                        89**********99999999888 PP
2zf-C2H212.80.00036108127120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C++Cg+sFs+   L  H 
  Brast02G213200.1.p 108 HQCTICGRSFSTGQALGGHK 127
                         79*********988887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-115883IPR007087Zinc finger, C2H2
SMARTSM003550.0455981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.7595986IPR007087Zinc finger, C2H2
SuperFamilySSF576674.56E-959130No hitNo description
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-5107130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.0E-12108131IPR007087Zinc finger, C2H2
SMARTSM003550.036108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVAALELSLS LSLPTPSAPA LSKDDYLAIC LAALANTGHV GSKWCPPRPA PAPAEELRFR  60
CMVCGKAFAS YQALGGHKSS HRKSPPASAA GDSYEAAAAS SGGSSGPHQC TICGRSFSTG  120
QALGGHKRCH YWDGTGNSVS VMSVSASASG SGVTTSSAVR KNFDLNLLPV PESVGIKRWA  180
QQEEEEVQSP LPAKKLRL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G213200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562378.15e-88zinc finger protein 36
SwissprotQ75KE52e-66ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLI1GQQ91e-86I1GQQ9_BRADI; Uncharacterized protein
STRINGBRADI1G16010.12e-87(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.11e-27zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]