PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G214500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 522aa    MW: 55184.8 Da    PI: 8.2867
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G214500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.7e-30236292259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkversa  +++++i+Y+g+Hnh+
  Brast02G214500.1.p 236 DDGYNWRKYGQKAVKGGEYPRSYYKCTQASCPVKKKVERSA-CGEITQIIYRGQHNHQ 292
                         8****************************************.9**************8 PP
2WRKY98.63.9e-31404462159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++er+++d + v++tYeg+H h+
  Brast02G214500.1.p 404 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFQGCDVKKHIERCSQDSTDVITTYEGKHSHD 462
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-27227294IPR003657WRKY domain
SuperFamilySSF1182906.54E-24233294IPR003657WRKY domain
SMARTSM007743.6E-31235293IPR003657WRKY domain
PfamPF031064.5E-23236292IPR003657WRKY domain
PROSITE profilePS5081123.502236294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-35391464IPR003657WRKY domain
SuperFamilySSF1182902.09E-28396464IPR003657WRKY domain
PROSITE profilePS5081135.519399464IPR003657WRKY domain
SMARTSM007741.2E-35404463IPR003657WRKY domain
PfamPF031068.1E-24405462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MFGPQPRPPK SPSASAPPPF LPTSTPMAAH GASASGGEGA RRPPPRPALS LPPRAAAESF  60
FAAAAAAGSA AETSPVPLTL AAALFPDMPS PAFHGSFTQL LVGAMGSPVA SSASGPSSPS  120
PFAVPPGLSP TALLGSPSLF SPTGSFEMTH RQALAQVTAQ AVHSQYTMAN QADYPLPFSS  180
TTTSALTSQH LNSSANMTST EEKPTPPSLA GNSNFEPNDV SQGFQTSALT VDKPADDGYN  240
WRKYGQKAVK GGEYPRSYYK CTQASCPVKK KVERSACGEI TQIIYRGQHN HQRPPKRRSK  300
DGGSLLDEVD DFRENGDTLT RSEQGCQDHS AKFEVSNDGI MVPSVSKRGE GGDQSSGSSD  360
TEEKAHDEAG ADNGDGGSTN AKKRHVPAPA QRIIVQTTSE VDLLDDGYRW RKYGQKVVKG  420
NPHPRSYYKC TFQGCDVKKH IERCSQDSTD VITTYEGKHS HDVPAARNSS HASNANVSSS  480
SSLRHRAQNT ASSSQPSLRR SALRTASSDS SLQLKEENEI T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-35221465578Probable WRKY transcription factor 4
2lex_A7e-35221465578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G214500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559732.10.0probable WRKY transcription factor 4
RefseqXP_010233399.10.0probable WRKY transcription factor 4
RefseqXP_024313340.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-107WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLI1GQR90.0I1GQR9_BRADI; Uncharacterized protein
STRINGBRADI1G16120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-87WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]