PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G215100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 763aa    MW: 87835.6 Da    PI: 8.8773
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G215100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.63.2e-16131243291
                FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk......................tekerrtraetrtgCkaklkv 68 
                         fYn+YA+ vGFs +k+ +++s      + t++t++C+++gk   ++                         +k r++++ + t+C+a+++v
  Brast02G215100.1.p 131 FYNTYASIVGFSAKKAGTYHSkgAAVSKATRYTYRCNRSGKIVGKEVLeqrkqrreqnrmqksqkacpaqIKKPRNNNTIEITDCHARMVV 221
                         9****************9999555567899**********97655444456788999**********9988889999************** PP

                FAR1  69 kkekdgkwevtkleleHnHelap 91 
                         +++  ++w vt++e +HnH+l+p
  Brast02G215100.1.p 222 TLK-GKRWIVTNIEMQHNHALSP 243
                         ***.9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-14131243IPR004330FAR1 DNA binding domain
PfamPF105513.4E-31364457IPR018289MULE transposase domain
PROSITE profilePS509669.693565601IPR007527Zinc finger, SWIM-type
PfamPF044346.5E-6572601IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-7576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MFMITGRDGR SDYTEETDEH DIDQEETLYD HVDCDSADDN AETHAVSIAS ETLSGVTHRA  60
EQLDHGHTHR FENQQMAENG ATVEHLSTED IENYLQNETV IASQTCSQEL RGQHVPHIDM  120
CFSSEAEAFA FYNTYASIVG FSAKKAGTYH SKGAAVSKAT RYTYRCNRSG KIVGKEVLEQ  180
RKQRREQNRM QKSQKACPAQ IKKPRNNNTI EITDCHARMV VTLKGKRWIV TNIEMQHNHA  240
LSPPGESKFL RSHKNMTDEE KLLIRTMNSV KLPSRKTMAI LAGFRGGISS LPYTKKDVSN  300
YRTAIRNENN QNDMMMVIDF FRKRQMQDPR FYYAFRVDNE NKVQNIFWAD GNSRRFYDLY  360
GDRISFDTTY KTNKYNLPFA PFVRITGHGN NCLFACAILQ NETIETFTWL FEEFLQCVRG  420
KMPITIITDQ DVAMKTTIPA VFTGTKHRNC LFHIKKKAEE KCAMCFAAKP MLHIEFNDVI  480
NKSEGTNAIF KDNVGSTYSI ISFLGEYQRI SDNIVEKEKE QDSKRRTTKP TLWAGSEIEL  540
QAAKMYNRNI FYNMLAELDF RERKFMVMVD WANQDISCIC ARFQKDGILC CHALKVLLHL  600
NLTAESSHFR YNVLSRHMID LCADASKLKE TYLYLLNKSK KIGRKICEMR KEADNRDGLN  660
QTEQPAQVNE TSGEVAPQNN SRTKHTSENI YKEPNVAKSK GRPKLPGTED SCRRNFHKTT  720
DNRSLMSFPP RDIQSPRVRK PTQKALENML LTPTRKQRKQ DV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G215100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317768.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3L6790.0A0A0Q3L679_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-68FAR1-related sequence 5