PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G215300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 354aa    MW: 37685.1 Da    PI: 6.9096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G215300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00095220242123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+Cp Cg+ F +   L  H  +H
  Brast02G215300.1.p 220 YECPGCGRAFQSYQALGGHRASH 242
                         99********9999888888777 PP
2zf-C2H212.80.00035290312123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C+k+F +   L  H r+H
  Brast02G215300.1.p 290 FECPICSKVFGSGQALGGHKRSH 312
                         89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0841638IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0141639IPR007087Zinc finger, C2H2
SuperFamilySSF576674.14E-81638No hitNo description
Gene3DG3DSA:3.30.160.602.1E-41638IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.5E-61638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576674.14E-8215242No hitNo description
PfamPF139126.8E-11219244IPR007087Zinc finger, C2H2
SMARTSM003550.21220242IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492220247IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SuperFamilySSF576677.64E-5288313No hitNo description
SMARTSM003550.026290312IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492290313IPR007087Zinc finger, C2H2
PfamPF139126.8E-13290313IPR007087Zinc finger, C2H2
PROSITE patternPS000280292312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDDDVVVLSS SSSTRHSCKV CGKGFPCGRS LGGHMRSHAL AEVATAAGEE TDSDEDEERR  60
WAARASNANA SASGAGYGLR ENPKKTRRLS RSAGADDDDA DGPAREEDGS MLIPLPLPLP  120
SDAAAPRRRR RSMRVPAPAP AFDKEPEDVA LCLIMLSRDT AGLCLPMPSE PSEKGGRIKK  180
LLAYDGSDDD TEMMMSNKRN TNNKAPITIS RSENPKRGRY ECPGCGRAFQ SYQALGGHRA  240
SHKRINSNCC TTKVFLDQPE PSVDTNASSS PPPSPQATPV VKPKNNNIKF ECPICSKVFG  300
SGQALGGHKR SHSIAGELYD RSSHGDAIIL DADQSLLAAG FLDLNLPAPG VED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G215300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559736.21e-152zinc finger protein ZAT5
TrEMBLI1GQS71e-150I1GQS7_BRADI; Uncharacterized protein
STRINGBRADI1G16200.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-26C2H2-like zinc finger protein