PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G223100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 345aa    MW: 35676.3 Da    PI: 8.1865
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G223100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.6e-393089362
              zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        ++ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+
  Brast02G223100.1.p 30 QAGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 89
                        66789****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-273286IPR003851Zinc finger, Dof-type
PfamPF027011.0E-323287IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6093387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGDEAVVPP RKGGTGTTTA AQPPSGDEAQ AGLRCPRCDS PNTKFCYYNN YSLSQPRHFC  60
KTCRRYWTKG GALRNVPVGG GCRKNKRSRS SSSASSAAAS RLSLNLPGPV DQHQNQQADQ  120
QHAAVRMGGG FHGVVDFHPG SISMLPGPGG LQLHSSSPTS AVVSHGQYVP FGEWPAPPGD  180
ANNNNVSGHG MSGIASSIES LSYINQDLHW KLQQQRVATM FLGPPVASPH SHSHDAQAHH  240
HHQFGAAGAF LQMETTTGAV PPAATSWFMQ DSSSSPYPPP APLPSSSSPC RPPVAAAAAS  300
CSNINSGRSS GGGGGDVDNA TSNNSCGGSD IPSWGDISTF AMLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G223100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3123315e-76AJ312331.1 Hordeum vulgare partial dof172 gene for dof zinc finger protein, exon 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559708.21e-117dof zinc finger protein DOF5.7
TrEMBLA0A0Q3GTX51e-116A0A0Q3GTX5_BRADI; Uncharacterized protein
STRINGBRADI1G15420.11e-118(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-33Dof family protein