PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G231600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 240aa    MW: 24723.8 Da    PI: 7.2635
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G231600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.6e-292104198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+G +g++++++++
  Brast02G231600.1.p   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGGIGLMWTGNWD 92 
                         6*********************9999888899*********************************************************** PP

              DUF260  87 leqlkaelallk 98 
                         l+q++a+++l++
  Brast02G231600.1.p  93 LCQAAADAVLRG 104
                         ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.5781107IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GGIGLMWTGN WDLCQAAADA VLRGDSLRAL SAVPAAFTDR  120
DLQGLYGAAN NSNNNNTGSS SSLLLHHASS SPENSSSSAP ARKRTKPNDS AAGAAAQQTM  180
KPPPALMMQS ACELDLCLTP VRPRGCGGGA SDEYSTTTCD EASGDAEAAA APALLNLFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G231600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666861e-165AK366686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177395.11e-114LOB domain-containing protein 39-like
TrEMBLA0A3B6JFF01e-112A0A3B6JFF0_WHEAT; Uncharacterized protein
TrEMBLA0A453HER91e-112A0A453HER9_AEGTS; Uncharacterized protein
STRINGTraes_4DS_9575221BB.31e-113(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-55LOB domain-containing protein 37