PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G232100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 213aa    MW: 22070 Da    PI: 8.7715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G232100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-056688123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ Cgk F++   L  H  +H
  Brast02G232100.1.p 66 YRCSVCGKAFPSYQALGGHKASH 88
                        9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-96588No hitNo description
SMARTSM003550.00516688IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-46688IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-136690IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8666693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576671.32E-9124151No hitNo description
PfamPF139122.7E-13128153IPR007087Zinc finger, C2H2
SMARTSM003550.22129151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAVEAASEHG GLQHCAEGWG KRKRTRRPQQ PAPTEEEHLA LSLLMLARGH RDGTSSSLQA  60
RLGQQYRCSV CGKAFPSYQA LGGHKASHRP KASPPSGADE SAADNTARAA SPPPAASSSA  120
SSGAAGKAHE CSVCKKAFPT GQALGGHKRC HYEGPPLGLG GSVASRGFDL NLPALPDIIV  180
NEPRCCVPAA AEEEEVLSPM ALIKKPRLMI PA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G232100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562286.11e-93zinc finger protein 1
SwissprotQ424309e-40ZFP1_WHEAT; Zinc finger protein 1
TrEMBLI1GQB72e-92I1GQB7_BRADI; Uncharacterized protein
STRINGBRADI1G14750.14e-93(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.18e-38C2H2 family protein