PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G235600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 164aa    MW: 18815.7 Da    PI: 6.6681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G235600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.5e-1413782897
                        --..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3 28 gkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                        +k e   +++le+++g s++v +  +k++g++v+ +GW +Fv+  +L+ g++++F+++g+s+f   v +f
  Brast02G235600.1.p 13 LKGEIRGEIKLETRNGCSYTVGI--SKNQGKVVFMAGWGQFVENFDLQMGESIIFRYNGSSQF--SVVMF 78
                        44445569***************..*********************************99999..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.744181IPR003340B3 DNA binding domain
PfamPF023624.1E-111179IPR003340B3 DNA binding domain
CDDcd100177.76E-121379No hitNo description
SuperFamilySSF1019362.94E-141480IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-151588IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MFLMGDFQHE MRLKGEIRGE IKLETRNGCS YTVGISKNQG KVVFMAGWGQ FVENFDLQMG  60
ESIIFRYNGS SQFSVVMFDK LGREKALSVI VDALWPHLQE SHTDVTETVC KKGKNMGAPC  120
ERCKWRGGLY YRDLDDREKH FLMVLMGDFQ HEMVTDPIYI ISI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G235600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014750916.17e-88putative B3 domain-containing protein Os08g0325100
SwissprotQ6Z0D91e-38Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLA0A0Q3J8H02e-86A0A0Q3J8H0_BRADI; Uncharacterized protein
STRINGBRADI1G14500.12e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]