PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G248100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 186aa    MW: 20943.8 Da    PI: 9.233
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G248100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY239.28.7e-7461605170
               YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                           +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+   q l +++h         +e  k ++ ++++n++ + s+s++
  Brast02G248100.1.p   6 APAEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLLVQDH--------SQESFKAHNISFRENYSDYGSSSKY 88 
                         5689*****************************************************9........6788899999**********99999 PP

               YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +  +++s++ d+e +     +rPPekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ihfgl
  Brast02G248100.1.p  89 RMPMMFSTKGDQEHTL---HVRPPEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPNIHFGL 160
                         9888888887777663...49****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.0E-727160IPR006780YABBY protein
SuperFamilySSF470951.24E-899154IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.3E-5107154IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSAQIAPAEH VCYVHCNFCN TILAVSVPSN SMLNIVTVRC GHCTSLLSVN LRGLIQSLLV  60
QDHSQESFKA HNISFRENYS DYGSSSKYRM PMMFSTKGDQ EHTLHVRPPE KRQRVPSAYN  120
RFIKEEIRRI KTNNPDISHR EAFSTAAKNW AHFPNIHFGL GSNESSKKLD EAIVAPIPQK  180
VQGLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G248100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0995850.0EU099585.1 Triticum aestivum YABBY2 (YAB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561769.11e-135protein YABBY 2
SwissprotQ10FZ71e-115YAB2_ORYSJ; Protein YABBY 2
TrEMBLI1GPY51e-134I1GPY5_BRADI; Uncharacterized protein
STRINGBRADI1G13570.11e-134(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-64YABBY family protein