PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G248400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 179aa    MW: 21048.7 Da    PI: 6.5063
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G248400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.44.4e-2232121390
                FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         Yn+YAk+ GFsvr + + + + ++e ++r+f+Cske +r e+    t+++r++ra tr+gCk +l+++++  +g w v++++  HnH++ 
  Brast02G248400.1.p  32 YNNYAKSKGFSVRLDDKDYINGTKELKRRRFCCSKEEYRLEKYFVaTDQKREPRALTRCGCKPMLEIQRDPgTGLWFVKNFVDVHNHPFD 121
                         9*************************************999876568999*********************9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-2032121IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDGNNPSMEE MEEYHMMVSQ MFGSDEEGYE PYNNYAKSKG FSVRLDDKDY INGTKELKRR  60
RFCCSKEEYR LEKYFVATDQ KREPRALTRC GCKPMLEIQR DPGTGLWFVK NFVDVHNHPF  120
DPKQSPFLWP HRRLNNTQKA DAVEYGLGGL CTCQIMEVME KHHGGYDQVG FVSRDLYNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G248400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757448.21e-114protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CN351e-109A0A2K2CN35_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G21270.11e-93(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1-related sequence 5