PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G253300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 129aa    MW: 14019.4 Da    PI: 8.3102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G253300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.41.1e-214196258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                        +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve +  dp+ + ++Y g H+h
  Brast02G253300.1.p 41 EDGYEWKKYGQKFIKNIQRIRSYFRCRDKRCGAKKKVEWQPGDPS-LRVVYDGAHRH 96
                        7****************************************9987.6899******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-233299IPR003657WRKY domain
PROSITE profilePS5081118.5213599IPR003657WRKY domain
SuperFamilySSF1182901.03E-203699IPR003657WRKY domain
SMARTSM007741.2E-204098IPR003657WRKY domain
PfamPF031064.8E-204196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MASSSQPTPT EGVGDEEDQQ QAAACPSPEA AASSSQLVMP EDGYEWKKYG QKFIKNIQRI  60
RSYFRCRDKR CGAKKKVEWQ PGDPSLRVVY DGAHRHGSPS SSCTGAGQDA AANRYELSAQ  120
YFGGPRTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G253300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8063895e-92JQ806389.1 Hordeum vulgare WRKY transcript factor 48 (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231847.12e-69probable WRKY transcription factor 2
TrEMBLI1GPU45e-68I1GPU4_BRADI; Uncharacterized protein
STRINGBRADI1G13207.19e-69(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-15WRKY DNA-binding protein 71