PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G260400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 475aa    MW: 50670.7 Da    PI: 7.8699
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G260400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27e-33193251260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g H+h+k
  Brast02G260400.1.p 193 EDGYNWRKYGQKQVKGSENPRSYYKCTYSNCSMKKKVERSLADGRITQIVYKGAHDHPK 251
                         8********************************************************85 PP
2WRKY105.23.5e-33347405159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+Hnh+
  Brast02G260400.1.p 347 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDNRAVITTYEGKHNHD 405
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28186252IPR003657WRKY domain
PROSITE profilePS5081126.36187252IPR003657WRKY domain
SuperFamilySSF1182901.31E-25191252IPR003657WRKY domain
SMARTSM007744.1E-35192251IPR003657WRKY domain
PfamPF031061.3E-24193250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-36332407IPR003657WRKY domain
SuperFamilySSF1182902.75E-29339407IPR003657WRKY domain
PROSITE profilePS5081138.01342407IPR003657WRKY domain
SMARTSM007749.1E-39347406IPR003657WRKY domain
PfamPF031069.2E-26348405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MASSTGSLDH AGFTFTPPTF ITSFTELLSG SGAGDVLAGS EQRSPMGFSR GARGGVPKFK  60
SAQPPSLPIS PPAASPFSYF SIPAGLSPAE LLDSPVLLNY SNILASPTTG AIPAQIYDWK  120
ASADLVTSQQ EESRGSGGFT DFSFQTVDTK TAAAQTNSFP SFKEQQQQVT EVSKSVPASN  180
NKSSGNNSNK QLEDGYNWRK YGQKQVKGSE NPRSYYKCTY SNCSMKKKVE RSLADGRITQ  240
IVYKGAHDHP KPLSTRRNSS GCAAVVADQD HPNGPEHSGA TPENSSVTFG DDEADNGSQR  300
SDGAEPEAKR WKEDADNEGS SGGVAGGGKP VREPRLVVQT LSDIDILDDG FRWRKYGQKV  360
VKGNPNPRSY YKCTTVGCPV RKHVERASHD NRAVITTYEG KHNHDVPVGR GARPTSSSSD  420
STTGAIRPAA GHGQQGPYTL EMLTNPAAGA GYGAFQRTKD EPRDDLFVDS LLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35192407877Probable WRKY transcription factor 4
2lex_A4e-35192407877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G260400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151406.10.0probable WRKY transcription factor 26
SwissprotQ6B6R41e-117WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1I9RYF40.0A0A1I9RYF4_9POAL; Transcription factor WRKY53
STRINGEMT331350.0(Aegilops tauschii)
STRINGTraes_1DS_A6733B734.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-106WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]