PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G263000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 482aa    MW: 52521.1 Da    PI: 8.7314
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G263000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.5e-11117208198
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k+   s+v+ ++ l++pk +a++     ++++ e++tl l d + ++ ++ +  ++ ++   lt+GW ++v++++L+  D vvF   + 
  Brast02G263000.1.p 117 FVKEI--SSVNDKQALIVPKACADSLllslNHNN-EKQTLHLLDVQRKELQFGH--SGDDQ---LTTGWDQYVRDKQLNHMDAVVFI--RG 197
                         66777..88888889********999**975554.556****************..66653...9**********************..34 PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                         ++++l+++ +r
  Brast02G263000.1.p 198 KNGQLLIGSRR 208
                         78878887766 PP
2Auxin_resp25.65.3e-10229282456
          Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalk..vkvsvGmRfkmafetedsse 56 
                         a   + +F+v+Y+Pr++++ Fvv+ e+v +a    +++ + m+++m    +d + 
  Brast02G263000.1.p 229 ARVAGGPFRVTYYPRQGWA-FVVPSEEVDEANArkINWQPWMKVRMVCPVDDHEL 282
                         5556789*********997.********987654489*********999888653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.17E-8116208No hitNo description
PfamPF023621.9E-8117208IPR003340B3 DNA binding domain
SMARTSM010190.0013117209IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-14122216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-9122207IPR015300DNA-binding pseudobarrel domain
PfamPF065072.1E-6228281IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAQPPPPPAA APPRPELERG VWLACAGPYA RLPATGSRVY YFPRGHADQC RGGVVRFPVQ  60
SVDEALPCIV SAIELFYRAP TDDPYAIITL LPDQGQAKAQ PSDYHASPTG SRSAAYFVKE  120
ISSVNDKQAL IVPKACADSL LLSLNHNNEK QTLHLLDVQR KELQFGHSGD DQLTTGWDQY  180
VRDKQLNHMD AVVFIRGKNG QLLIGSRRTL PSEHHAREQV QDVMEAAAAR VAGGPFRVTY  240
YPRQGWAFVV PSEEVDEANA RKINWQPWMK VRMVCPVDDH ELESSRLLAK RRNFYDGNVA  300
AVNNTTWDKL QVNWKTSWSK NSPTINDLPR RQVNVWQVQF KGEPEPSPTK KRKMSQSRNF  360
AVGHPSSKSK VPCPGATTAQ YMVGSPTAAG VHGGSQGSLT DVPSPSSTQV SETPFGAEMA  420
PAPAPGVPTQ NIASSSTARS IKLFSVKMAP GVAPVDVTPK DDNPAKNPPA KDDDQNPVES  480
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-251731419335Auxin response factor 1
4ldy_B4e-251731419335Auxin response factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G263000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229512.10.0auxin response factor 13-like
TrEMBLA0A2K2DJ580.0A0A2K2DJ58_BRADI; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-32auxin response factor 17