PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G263100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 380aa    MW: 42308.8 Da    PI: 7.776
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G263100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-10120209195
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldg 86 
                         f  ++++s + k++ +v+pk +ae+     ++++ e++tl l d + ++ ++ +  ++ + +  lt+GW ++v++++L+   D vvF ++ 
  Brast02G263100.1.p 120 F-VKEISSENDKKA-FVVPKACAESLllslNHNN-EKQTLDLLDVQRKELQFGH--NGDD-Q--LTTGWDQYVRDKQLRlCLDAVVFIRS- 201
                         4.445566666666.********999**985554.556****************..6666.4..9**************889*****943. PP

                         SSEE..EEE CS
                  B3  87 rsefelvvk 95 
                           +++l+++
  Brast02G263100.1.p 202 -ANAQLLIG 209
                         .45555665 PP
2Auxin_resp302.3e-11233306468
          Auxin_resp   4 aastksvFevvYnPrastseFvvkvekveka..lkvkvsvGmRfkmafeted.......sserrl.sGtvvgvsd 68 
                         a   + +F+v+Y+Pr+++ +Fvv +e+v +a   ++ + +Gm+++m    +d       +++r +  G+v++v++
  Brast02G263100.1.p 233 ARVAGGPFRVTYYPRQGW-DFVVLREEVDAAdaRNIDWQPGMKVRMVCPVDDhelessrAQRRDFyEGIVTAVNN 306
                         5556789********987.9******99765216799*********98777622211113344445777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.26E-7119198No hitNo description
Gene3DG3DSA:2.40.330.101.4E-11119220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-6119211IPR015300DNA-binding pseudobarrel domain
PfamPF065077.2E-8232306IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAQPSPPPAA VPPRPELERE VWLACAGPFG CLPATGSRVY YFPRGHADQC GQARLPDQPV  60
DEALPCIVSA VELFYRAPTD DPYAIISLLP DQAQAQGQAR GQPSSDHQAN LTGSRFAAYF  120
VKEISSENDK KAFVVPKACA ESLLLSLNHN NEKQTLDLLD VQRKELQFGH NGDDQLTTGW  180
DQYVRDKQLR LCLDAVVFIR SANAQLLIGS RRTLPSEHHA REQVQDVMEA AAARVAGGPF  240
RVTYYPRQGW DFVVLREEVD AADARNIDWQ PGMKVRMVCP VDDHELESSR AQRRDFYEGI  300
VTAVNNTTWC KLEIDWKIGW RSPKPWIGDI PGRRVNVWRV QLQGGPSPGK KRKKSQSHNF  360
DAGHPSSKSK VPNLMPGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-221434148388Auxin response factor 5
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349353KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G263100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229511.10.0auxin response factor 13-like
TrEMBLA0A2K2DJ530.0A0A2K2DJ53_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-28auxin response factor 17