PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G284900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 226aa    MW: 23499.2 Da    PI: 8.2225
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G284900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer80.12.7e-251169357
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegt....aaalkCaACgCHRnFHRrev 57
                        + +Y+eCl+NhAa+lG++a DGC+E++p++ + g        l CaACgCHRnFHR+  
  Brast02G284900.1.p 11 REVYRECLRNHAAKLGTYASDGCCEYTPADADAGAgagaGGLLLCAACGCHRNFHRKAF 69
                        568*************************9766655333244589************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-211368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.0E-191467IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-81467IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.6191468IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.21E-1597172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-2698172IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-26111172IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEQLQQQERA REVYRECLRN HAAKLGTYAS DGCCEYTPAD ADAGAGAGAG GLLLCAACGC  60
HRNFHRKAFL DATAPMLHPA PGAPPGYGNM HMAMSAGDVG GSGSGSGSGR RRTRTKFTEE  120
QKARMLRFAE RLGWRMPKRE PGRAPGDDEV ARFCREIGVA RQVFKVWMHN HKVGGSGGAG  180
GGGGAQTSSS TTRGGGGGLG AMSTAAMGSG DGEDDEEVRG NEMCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-171101751776ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G284900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0915322e-86AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149592e-86AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-86CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560584.11e-113zinc-finger homeodomain protein 11
SwissprotA2XLF41e-85ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-85ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLI1GNY81e-112I1GNY8_BRADI; Uncharacterized protein
STRINGBRADI1G10610.11e-113(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.18e-27homeobox protein 22