PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G292700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRF

Protein Properties

Length: 575aa MW: 61458.5 Da PI: 6.7578

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G292700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.3e-24	198	242	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Brast02G292700.1.p 198 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 242 79****************************************986 PP
2	QLQ	61.3	2.6e-21	132	168	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan+ vPp Ll +i++ Brast02G292700.1.p 132 GPFTPSQWMELEHQALIYKYLAANMSVPPSLLIPIRR 168 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-13	132	168	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.4E-16	133	167	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.23	133	168	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	198	242	IPR014977	WRC domain
Pfam	PF08879	2.0E-20	199	241	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MDLGGVLMAA VDAGVGGGAE HGVLGSRMLK HGRGNAEDEH GWRPPAKQAR AEDDAVSEAV 60 KVAAPYLMGS CSPGHGRERM LSFSSSASSR PSAANAAEGA MPLYYGTPAS CSGLSSVSLS 120 ASIQGAMARV RGPFTPSQWM ELEHQALIYK YLAANMSVPP SLLIPIRRSL ASLYPPAYFG 180 SSTLGWGSFQ LGYTGNSDPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV 240 EGQPGQAAKA MSATVAAAAA QPSAIATVGD GATANLTISH QQQPVKNYAV STTDPCSLQY 300 NSELVNKQNE SEQAQDSDSL SMLTSMSVRS TGNLFPFSKQ HKPFEVTTSR PDYGLVSCDS 360 LMSSPHSSLE NVNLLASQSL NEHQSSLSLQ HFVDWPRTPS QGALSWPDTE EIQAQRTQLS 420 ISVPMGSSDL SSASTSPIHE KLMLSPLKLS REYSPIGLSI TANRDEVTQG EQDWMPTFHD 480 SSMGGPLGEV LTKNSNMEAR NHLSASLNLL TDAWDSSPLE TSPVGVLQKT TFGSVSSSTG 540 SSPRMENQSV YDGISNLRDD LGSIVVNHPS IRLV*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MDLGGVLMAA VDAGVGGGAE HGVLGSRMLK HGRGNAEDEH GWRPPAKQAR AEDDAVSEAV  60
KVAAPYLMGS CSPGHGRERM LSFSSSASSR PSAANAAEGA MPLYYGTPAS CSGLSSVSLS  120
ASIQGAMARV RGPFTPSQWM ELEHQALIYK YLAANMSVPP SLLIPIRRSL ASLYPPAYFG  180
SSTLGWGSFQ LGYTGNSDPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV  240
EGQPGQAAKA MSATVAAAAA QPSAIATVGD GATANLTISH QQQPVKNYAV STTDPCSLQY  300
NSELVNKQNE SEQAQDSDSL SMLTSMSVRS TGNLFPFSKQ HKPFEVTTSR PDYGLVSCDS  360
LMSSPHSSLE NVNLLASQSL NEHQSSLSLQ HFVDWPRTPS QGALSWPDTE EIQAQRTQLS  420
ISVPMGSSDL SSASTSPIHE KLMLSPLKLS REYSPIGLSI TANRDEVTQG EQDWMPTFHD  480
SSMGGPLGEV LTKNSNMEAR NHLSASLNLL TDAWDSSPLE TSPVGVLQKT TFGSVSSSTG  540
SSPRMENQSV YDGISNLRDD LGSIVVNHPS IRLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G292700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073578	1e-146	AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003560274.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A0Q3GR54	0.0	A0A0Q3GR54_BRADI; Uncharacterized protein
STRING	BRADI1G09900.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	4e-64	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Brast02G292700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]