PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G296200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 170aa    MW: 18994.7 Da    PI: 10.0356
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G296200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-095580126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ykt+lC  f  +G C y drC+FaHg
  Brast02G296200.1.p 55 YKTKLCEKFETNGRCIYLDRCTFAHG 80
                        9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.1E-164987IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-95385IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-45481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2445482IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-75580IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDRENHPSKT TPEHVMGQTG DRSMRPPPPP QPSERIGLAG SPKWSNQPPL TKIFYKTKLC  60
EKFETNGRCI YLDRCTFAHG VAELRRPSFA QGPTIRNPGE MKMVEAQKSG IPPAQASSGR  120
AFPSMPTPTM LNYPRQIPEE KEGVAKISNL ERLSRKKTNG IYGDWPEQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G296200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230380.18e-72mRNA decay factor CTH1
TrEMBLA0A0Q3JMU45e-62A0A0Q3JMU4_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-11C3H family protein