PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G297100.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 232aa    MW: 25400.2 Da    PI: 9.4278
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G297100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.3e-15121157135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Brast02G297100.3.p 121 CHNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 157
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PfamPF062038.2E-165090IPR010402CCT domain
PROSITE profilePS5101713.3545092IPR010402CCT domain
SMARTSM004011.9E-8115169IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-11118168No hitNo description
Gene3DG3DSA:3.30.50.104.4E-14119159IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440121148IPR000679Zinc finger, GATA-type
CDDcd002021.12E-11121159No hitNo description
PfamPF003203.5E-13121157IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRFCRLCSSG SLGVQAVLLV LGGCEVPPGL ASMAVPTAYG EKNTTVAAKR VASLMRFREK  60
RKERCFDKKI RYGVRKEVAQ KMKRRKGQFA GRADLGDGAC ASAVCFSRAN GEDDHFLETY  120
CHNCGISSRL TPAMRRGPAG PRSLCNACGL MWANKGTLRS HLNAPKMTVQ HPPNLSKMDS  180
MDDDKTILHA EHDHTTIKMD SGMIPEQEQR LEPLQPTEDN SMTASQPKTT S*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G297100.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4238710.0EF423871.1 Triticum aestivum GATA-type zinc finger protein (ZF001) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559456.11e-132GATA transcription factor 19 isoform X1
SwissprotQ0DNU11e-117GAT19_ORYSJ; GATA transcription factor 19
TrEMBLI1GNL71e-130I1GNL7_BRADI; Uncharacterized protein
STRINGBRADI1G09550.11e-131(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-39ZIM-LIKE 2