PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G297100.4.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 181aa    MW: 19629.9 Da    PI: 10.6608
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G297100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.11.6e-15121157135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Brast02G297100.4.p 121 CHNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 157
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PfamPF062035.4E-165090IPR010402CCT domain
PROSITE profilePS5101713.3545092IPR010402CCT domain
SMARTSM004011.9E-8115169IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-11118167No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14119159IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.3E-13121157IPR000679Zinc finger, GATA-type
PROSITE patternPS003440121148IPR000679Zinc finger, GATA-type
CDDcd002024.84E-11121159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MRFCRLCSSG SLGVQAVLLV LGGCEVPPGL ASMAVPTAYG EKNTTVAAKR VASLMRFREK  60
RKERCFDKKI RYGVRKEVAQ KMKRRKGQFA GRADLGDGAC ASAVCFSRAN GEDDHFLETY  120
CHNCGISSRL TPAMRRGPAG PRSLCNACGL MWANKGTLRS HLNAPKMTVQ HPPNLSKMHG  180
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G297100.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4238711e-163EF423871.1 Triticum aestivum GATA-type zinc finger protein (ZF001) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317755.11e-112GATA transcription factor 19 isoform X3
SwissprotQ0DNU11e-101GAT19_ORYSJ; GATA transcription factor 19
TrEMBLI1GNL71e-110I1GNL7_BRADI; Uncharacterized protein
STRINGBRADI1G09550.11e-111(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-39ZIM-LIKE 2