PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G325900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 1194aa    MW: 134427 Da    PI: 7.2578
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G325900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.15e-0752866090
                FAR1 60 tgCkaklkvkkek....dgkwevtkleleHnHela 90
                          C+a+++v k++     gkw+v+kl+ eHnHel 
  Brast02G325900.1.p 52 ERCRAMMEVVKKDavgaGGKWKVSKLVVEHNHELE 86
                        57*****998888788899**************95 PP
2FAR1225.2e-07117168248
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....t 48 
                         fY  Y+++vGF+ r+ ++++s  +g +++++f C +  + ++++k+     +
  Brast02G325900.1.p 117 FYLGYGETVGFEARTGSNRRSVGTGAMIMQRFLCCRGNYVNRKSKAakgseE 168
                         9***********************************9988888877333331 PP
3FAR175.79.3e-24423509190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY +YA ++GF+vrk  s k+  n+ + +r +vCskeg+r ++ ++  +++++r   rtgC+a++++k +++gk++vt+ + +HnH+l 
  Brast02G325900.1.p 423 EFYVSYAGSAGFNVRKGCSDKT-ANNVMRSRAYVCSKEGFRLKSVTA--EQKKPRLDARTGCQAHMTIKITTSGKYVVTEYVADHNHDLE 509
                         6*****************9999.6667****************9988..999***********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-4117168IPR004330FAR1 DNA binding domain
PfamPF031012.7E-21423509IPR004330FAR1 DNA binding domain
PfamPF105515.9E-24609703IPR018289MULE transposase domain
PROSITE profilePS5096610.052877924IPR007527Zinc finger, SWIM-type
PfamPF044348.4E-6877921IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-6899926IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1194 aa     Download sequence    Send to blast
MAGAGTSDPP PPEPEEPLSR EYLSLRQAGE ATEEEEGASR SPPAPAGTPG GERCRAMMEV  60
VKKDAVGAGG KWKVSKLVVE HNHELEVAPG EGGGAARAPG VPAVGMEFDS VDDAKGFYLG  120
YGETVGFEAR TGSNRRSVGT GAMIMQRFLC CRGNYVNRKS KAAKGSEEVE ESAAQKGKGK  180
IGPCKKRGRK PGKKNAHAKE VEKGVGIVRT ETVQAVPSRR SSRRGRDEKG VVGMAVENVI  240
QPEEQNDEVV DVTRNGSAGG DGDEEEDEME EEVETQEKRG RGRPRKAVTE GNALQACGLG  300
VSASQCNNDD RKKILNKYLS KRQSRPVSGR PAKIVSRQAL AERRKRGVGG RFLASEGLQP  360
SRQPSERRSK RLEKQNLKEE EKPESKKDEI TEAEADPETE VVAGPGGEPK IGMVFVNEDK  420
AYEFYVSYAG SAGFNVRKGC SDKTANNVMR SRAYVCSKEG FRLKSVTAEQ KKPRLDARTG  480
CQAHMTIKIT TSGKYVVTEY VADHNHDLEA PLVDIQILRS EKFLAKLQQP LDLPKVVSIP  540
DDYKNYIRTR STKDMPLGDA QAICEYLQRM KGENPSFFYS IQVDEDDQFR NVFWSDIKSM  600
MDYNYFGDVL CVDTRYSTSH YGRPLLLFIG VNHHKQPTIF GTAFIYDESV ESFKWLFETF  660
KSAMSGKQPK TVLTDHSPTI SDAVASAWPG TAHRFSLLHL YQNATKILKD TFQGSETFAH  720
DFSRSLYNYE EEEDFLSNWE ILSGKYSLKD NDWVSKLFEN RERWALPYGR DTFCADIAAT  780
LQCDNTDAVL SDILKTEIDL PYFFNSYNKF LEEKRLAERQ ADYHGVQMTQ RVAPLRLLWQ  840
AANTYTPALF EMFRLEYELI LACMIYSCGE IGSISDYEVT VKNRPRVHFV RFDSSEYKVV  900
CSCKKFEFVG ILCCHILKVL EIRNVKELPP HYILKRWRKD AQTEENYGFA AVDEDPKFSV  960
SKRYNSLCRT LYKIAAKAAE NTEAHTFLEN QYDQLLEQVE LILQEKLHDK SSLSTIMKSH  1020
QQNLIQNDAS NSEPRRASIK KRKNVEMRRR QRSPLESSKK KKGRQDLLEP EECEVPLRNE  1080
PSTIPNDIQN HLTTPTNQFL SPSHIMQVPY VTQQFGLNSL QGFPGISPFG QMQEPSHVHL  1140
QQPHLQQSHF LSGPQIHQAP PPDIQSLQFL SSNPQLGHQT TDSQYTIPVW DFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277285KRGRGRPRK
210331042PRRASIKKRK
310471061RRRQRSPLESSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G325900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558513.10.0protein FAR1-RELATED SEQUENCE 12 isoform X1
TrEMBLI1GMQ30.0I1GMQ3_BRADI; Uncharacterized protein
STRINGBRADI1G06907.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5