PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G342300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 392aa    MW: 41905.6 Da    PI: 9.7648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G342300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29319377259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YYrC+s  +Cp++k+ver++ d  ++++tYe++Hnh 
  Brast02G342300.1.p 319 ADNYSWRKYGQKPIKGSPHPRGYYRCSSIkDCPARKHVERCRGDAGMLIVTYENDHNHA 377
                         69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.2E-14282316IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-32308379IPR003657WRKY domain
PROSITE profilePS5081129.907313379IPR003657WRKY domain
SuperFamilySSF1182903.79E-26316379IPR003657WRKY domain
SMARTSM007743.2E-35318378IPR003657WRKY domain
PfamPF031061.0E-24320376IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEGVEEANRA AVGSCTKLVA SLARSGGGPF RVRPAAETDE AVAMFGKVVT ILSNRVGHAR  60
AKVGGARKLE LDPSFLLEYH PPPANGFRGH GQGSEFTPAL PPQPPLPVIT SKHEIKAAEV  120
DYRALFLETP LLDLSGRTAT AAATATASSS MAAPVQKQIN TSKSPAANPP PPTLLLPPPC  180
ATKIQFHQQQ QQGQQGKMRV QLEQQQQQKA AAPGEKQQLF QMEMAPRSSK EPEVISFSFD  240
NNSACTSSAA SFFTSISSQL ISMTSDAAPA PRTKAAPPGC GKKAADADGG CHCPKKKKPR  300
EKRVVRMPAI SDKVADIPAD NYSWRKYGQK PIKGSPHPRG YYRCSSIKDC PARKHVERCR  360
GDAGMLIVTY ENDHNHAQPL DLSTLPSNSE A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-193163791274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G342300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3700431e-113AK370043.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752047.10.0protein WRKY1
TrEMBLA0A0Q3N7P81e-180A0A0Q3N7P8_BRADI; Uncharacterized protein
STRINGTraes_5BL_E294922A9.21e-113(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-38WRKY DNA-binding protein 7