PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G345200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 247aa MW: 26676.5 Da PI: 6.8967

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G345200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	127	174	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++ L+ Brast02G345200.1.p 127 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 174 8***********************9....677************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-17	121	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-9	121	178	No hit	No description
PROSITE profile	PS50888	15.663	123	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-18	123	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-7	127	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-10	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDPAAEPWRP TAPHLAGASG ASSAVTGQSN GRRRRQPRGE PAPPPSEDDS SRPVSTSGGG 60 GGHDLIDSEA KRFKAHKSSD DNGSFRTDAE GDSRSGSKVV DQNPPPPEPP KQDYIHVRAR 120 RGQATDSHSL AERARREKIT ERMKILQDLV PGCNKVIGKA SVLDEIINYV QALERQVEFL 180 SMKLEAVNAH VNNGVETFPS KDFGAPMFNT APGLTFDPQT PREYAQGSPA SEWLHMQIGG 240 TYERVT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250\|UniProtKB:Q69WS3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G345200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559284.1	1e-149	transcription factor BHLH089
Swissprot	Q84T08	1e-117	BH089_ORYSJ; Transcription factor BHLH089
TrEMBL	I1GM17	1e-148	I1GM17_BRADI; Uncharacterized protein
STRING	BRADI1G05037.1	1e-149	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3065	35	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	1e-65	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Brast02G345200.1.p

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]