PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G354300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 254aa    MW: 26791.3 Da    PI: 5.1131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G354300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-1172118354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  Brast02G354300.1.p  72 RNHREAEKRRRERIKSHLDRLRAVLACD-----PKIDKASLLAKAVERVRDL 118
                         68************************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.86569118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1072129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1172135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-972118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-775124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MFPAPETAAF VVEAGVAARQ GDPASGLPPF FMGSMWPAAG GGAGEAACEE EDEAAVAMAE  60
AALQERAVAA TRNHREAEKR RRERIKSHLD RLRAVLACDP KIDKASLLAK AVERVRDLKQ  120
RMAGIGAESA EAPAQLFPTE HDEIVVLESS GGVFEASVCC DDRSDLLPGL IDTLRALRLR  180
TLRAEMATLG GRVRNVLVLA RDAGAEDDDD GGGDFLKEAL RALVERHGGA AGGGGDRPKR  240
RRTVSDMNVQ AAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237243PKRRRTV
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G354300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279661e-121KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559255.11e-107transcription factor bHLH106
SwissprotO806741e-46BH106_ARATH; Transcription factor bHLH106
TrEMBLI1GLR71e-106I1GLR7_BRADI; Uncharacterized protein
STRINGBRADI1G04280.11e-107(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]