PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G360100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 170aa    MW: 18106.5 Da    PI: 11.0556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G360100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000793961123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+++F++   L  H  +H
  Brast02G360100.1.p 39 FQCKTCSRRFTSFQALGGHRASH 61
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.67E-737105No hitNo description
PfamPF139122.9E-113863IPR007087Zinc finger, C2H2
SMARTSM003550.183961IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2423966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139124.7E-883107IPR007087Zinc finger, C2H2
SMARTSM003557.883105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQRPSFGQEP AAVAQEVMLL LARVAEGAHA QPVAMPRAFQ CKTCSRRFTS FQALGGHRAS  60
HKRPRGNAAL APAPAQARRR RRHGCAVCGL EFALGQALGG HMRRHRAGAG AEEDETSARG  120
AADEEREQQQ QRGGEISETT RPGMLLGLDL NAAPPSDGAG TPQLLRLWV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G360100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312546.11e-74zinc finger protein ZAT12-like
TrEMBLI1GLK72e-73I1GLK7_BRADI; Uncharacterized protein
STRINGBRADI1G03810.14e-74(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.17e-14C2H2 family protein