PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G360300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 176aa    MW: 19213.7 Da    PI: 10.0544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G360300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016118140123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F     L  H+r+H
  Brast02G360300.1.p 118 HECQICGLGFEMGQALGGHMRRH 140
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.14E-75779No hitNo description
PROSITE profilePS501579.9725784IPR007087Zinc finger, C2H2
PfamPF139128.8E-105781IPR007087Zinc finger, C2H2
SMARTSM003550.965779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576675.14E-7113140No hitNo description
PfamPF139123.2E-11117143IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64118145IPR007087Zinc finger, C2H2
SMARTSM003550.55118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGVKRERDQE ETAAVVSLSL SLSTDSSTTT TESGSPAAKR ARQRRRSRAA AAAEGEFVCK  60
TCSRAFASFQ ALGGHRTSHL RGRRHGLELG VGVARAIKEH QQRLRRKEEE DQDKKQRHEC  120
QICGLGFEMG QALGGHMRRH REEMLTTGAD RWVVDLGAVA GHGAGEPPVL LELFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G360300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2530457e-49AK253045.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf58a18, mRNA sequence.
GenBankAK3556327e-49AK355632.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023K12.
GenBankEU4082247e-49EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559238.11e-79zinc finger protein ZAT9
TrEMBLI1GLK43e-78I1GLK4_BRADI; Uncharacterized protein
STRINGBRADI1G03790.14e-79(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-19C2H2 family protein