PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G360400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 143aa    MW: 15236.6 Da    PI: 10.951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G360400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031101123123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg  F     L  H+r+H
  Brast02G360400.1.p 101 HECHVCGAAFEMGQALGGHMRRH 123
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-64373No hitNo description
PROSITE profilePS501579.934774IPR007087Zinc finger, C2H2
SMARTSM003550.964769IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-104771IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-699127No hitNo description
PROSITE profilePS5015710.429101128IPR007087Zinc finger, C2H2
SMARTSM003550.26101123IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-12101126IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKHAPRDLQS EVASAPPLSL SLSLGAMAAE RKIKKLRHRA AGGEESFVCK TCSRAFASFQ  60
ALGGHRTSHL RGRHGLALSL AGLPPAPAPR KTEQKKPPQQ HECHVCGAAF EMGQALGGHM  120
RRHREEAAAQ AQAPPVLLQL FV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G360400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563654.15e-68zinc finger protein ZAT8
TrEMBLI1GLK31e-66I1GLK3_BRADI; Uncharacterized protein
STRINGBRADI1G03780.12e-67(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.15e-18C2H2 family protein