PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G360500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 136aa    MW: 14370.6 Da    PI: 10.7643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G360500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001296118123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg  F +   L  H+r+H
  Brast02G360500.1.p  96 HECHVCGAGFETGQALGGHMRRH 118
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.1E-43966IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-63969No hitNo description
PfamPF139123.1E-104367IPR007087Zinc finger, C2H2
PROSITE profilePS501579.934370IPR007087Zinc finger, C2H2
SMARTSM003550.964365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576675.33E-695122No hitNo description
PfamPF139125.0E-1296121IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.22196123IPR007087Zinc finger, C2H2
SMARTSM003550.04596118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MKQPGDQSEV PLSLSLSPCA MAAERKIKKL RHGAAGGAGE SPFVCKTCSR AFASFQALGG  60
HRTSHLRGRH GLALSLAGLP PPARRKTDQK KPPPQHECHV CGAGFETGQA LGGHMRRHRE  120
EAAAQPPPVL LQLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G360500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227659.26e-58zinc finger protein ZAT12
TrEMBLA0A0Q3RGR61e-56A0A0Q3RGR6_BRADI; Uncharacterized protein
STRINGBRADI1G03770.14e-58(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.19e-20C2H2 family protein