PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G383500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 329aa    MW: 36629.5 Da    PI: 4.3726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G383500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.29.8e-1751452127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknra..tk..s 80 
                         p+G+ F+P+++el + yL+ ++++ k     +i+ +d+y++eP++L k            ++  wyfFs+ + +++++k  +ra  +   s
  Brast02G383500.1.p   5 PRGCIFEPSEKELTDVYLHDRIAEGKEYP-GFIHVADVYSAEPEELVKwfapapgtGRGDKDPVWYFFSPVHYASKKKKSGRRAraVGgdS 94 
                         89*******************99988444.78**************755677775322224559*****9887777655555542233445 PP

                 NAM  81 gy.WkatgkdkevlskkgelvglkktLvfy....kgrapkgektdWvmheyr 127
                         g  W++     +v   ++   g k +L++        ++k +++ W++ e+ 
  Brast02G383500.1.p  95 GKkWHSEIGPVPVNG-GSDFGGHKLSLTYMvrdgASGEKKHQRAGWILAEFG 145
                         545**9999999998.88899*********8766334555589*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.1894163IPR003441NAC domain
SuperFamilySSF1019412.35E-214161IPR003441NAC domain
PfamPF023651.9E-95145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRAAPRGCIF EPSEKELTDV YLHDRIAEGK EYPGFIHVAD VYSAEPEELV KWFAPAPGTG  60
RGDKDPVWYF FSPVHYASKK KKSGRRARAV GGDSGKKWHS EIGPVPVNGG SDFGGHKLSL  120
TYMVRDGASG EKKHQRAGWI LAEFGILPEH GGGQLEVCKL HRSPRFKEEA AAGSSKKRKA  180
PAEDELSAAD QRKNLCLRQE VPQDDDHETT MDPQEVQQEA PILDYAAFLE TQRMYFSDDI  240
QEGTQQTEVP ILDDDAFGLE LEAIQRLLVS DEEREMDPAE EDEDDGRFWC TYDELLGIDG  300
DADDDMAAAA CESTEHLHVA PDFLLEME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G383500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229409.11e-118NAC domain-containing protein 17
TrEMBLA0A0Q3GLX71e-116A0A0Q3GLX7_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2274024