PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G383700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 446aa    MW: 47507.6 Da    PI: 9.9964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G383700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.95.4e-12313411128
                 NAM  11 deelvveyLkkkvegkklelee..v.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         d el+  +Lk +v++ ++++ +  + i+e+d+y+  P dL         +++ +  y+Fs++  ky +g +++r++ +g W++  ++k + 
  Brast02G383700.1.p   3 DLELL-GHLKLRVAQGSFPAGTngItIHEADVYSGAPADLVGgrdhaGGTGDGNTRYYFSRA--KYGKGGKRQRKAGAGCWHTERTSKILD 90 
                         78888.78999999999555323345**************7334443222245577999885..788899999999******777665555 PP

                 NAM  94 skkgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                         ++++++ g  + L +          k +++k +++ W+m e +l
  Brast02G383700.1.p  91 RHGEKAGGYARHLSYVtktpesadpKPKRQKISRSGWCMTEIAL 134
                         557788999*******887776665567777789******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.2461150IPR003441NAC domain
SuperFamilySSF1019416.15E-182149IPR003441NAC domain
PfamPF023651.1E-53132IPR003441NAC domain
Gene3DG3DSA:3.40.1160.103.3E-9234288IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.6E-7239295IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.65E-10239294IPR001048Aspartate/glutamate/uridylate kinase
PROSITE patternPS003240240248IPR018042Aspartate kinase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008652Biological Processcellular amino acid biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0004072Molecular Functionaspartate kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSDLELLGHL KLRVAQGSFP AGTNGITIHE ADVYSGAPAD LVGGRDHAGG TGDGNTRYYF  60
SRAKYGKGGK RQRKAGAGCW HTERTSKILD RHGEKAGGYA RHLSYVTKTP ESADPKPKRQ  120
KISRSGWCMT EIALEHDGAG EIVLCKVYKA NRAGQGTASI SAGAAAADHR AVVNPPAVGP  180
RPAFSLQPDG RGISEEEAHE SAALDLELPG GDSDSDISVL VPRVPPDGVR AATAMAHAVV  240
MKFGGSSIAS PEKMKEAAEL VLSLERPVVV LSAMGATTNN LILASEKASS RRIQPHQIYE  300
YAVILELYHR NQCRVAQHRR RAAGPCPHRT AAARLDDLGA EGSGLDVAGK ILPVELQEAD  360
GVEVARREHG ARAEHLGADQ EAAQHLRPCP HRPACAAARP APPHRLLARS APPNRRAAHV  420
ARHGRSSLRF GKRRKSRRLD LESGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cdq_A2e-1424031130104ASPARTOKINASE
2cdq_B2e-1424031130104ASPARTOKINASE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G383700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972