PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G386800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YC
Protein Properties Length: 313aa    MW: 32168.6 Da    PI: 10.9851
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G386800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC28.43.6e-092182962098
               NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                         ++P+ar++ +++ ++   + + e+  l+ ka elf+  ++  ++ +a + +++++   +++++v + + ++fl d vp 
  Brast02G386800.1.p 218 SFPMARVRLLMRDEDASMRATNETVFLINKASELFLEAFAKDAYQNALKERKKSIAYDNLSTSVCNQKPYKFLSDFVPL 296
                         79******9998666666677889999*************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.91E-14198296IPR009072Histone-fold
PfamPF008085.7E-10218280IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-17219295IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAGKKRAAAG PAPPPSANRP DVAVASGPSA KRGRGRPKST APTSASAATA SSPGSTAPNS  60
AAAIERAAPK PGKSEKGAPK KKKEPQEEGG KRKKQQAAGG AEKATTPAKM KKKGGGEAEP  120
GSRKQKLSGE AAEKPAPTKK KQQASGGAGK ATSPSKRKRG DAEQPKSAKK GPAGAEKPTP  180
SKRKKKEDGE AEAKSGKKKG SPAKKAAAAA AAEPGSCSFP MARVRLLMRD EDASMRATNE  240
TVFLINKASE LFLEAFAKDA YQNALKERKK SIAYDNLSTS VCNQKPYKFL SDFVPLRVTA  300
GDALKATAVD KP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138158KKKQQASGGAGKATSPSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G386800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232191.11e-136histone H1.3
TrEMBLI1GKR21e-134I1GKR2_BRADI; Uncharacterized protein
STRINGBRADI1G01300.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-21nuclear factor Y, subunit C10