PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G393200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 282aa    MW: 29527.8 Da    PI: 7.814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G393200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-17135185356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ++GVr ++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +++g+
  Brast02G393200.1.p 135 FRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAAMAYDQAAFAMRGA 185
                         89******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.589134192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-29134193IPR001471AP2/ERF domain
SMARTSM003801.7E-34134198IPR001471AP2/ERF domain
CDDcd000181.70E-12135194No hitNo description
PRINTSPR003675.9E-12135146IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21135193IPR016177DNA-binding domain
PfamPF008471.5E-12135184IPR001471AP2/ERF domain
PRINTSPR003675.9E-12174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSDHPRSTAA AASASSSSSS SSSSSSSSSP RLTSGVVNFL ARRAMTATQQ RAAFRVPLDS  60
PGSSTGSADS APWSAAIAHD LPLPLDTHDA DEMLLLHMLS SQDASAAVLP VPTTTAAPAP  120
EVKREEDAAA NGRAFRGVRK RPWGKFAAEI RDSTRNGVRV WLGTFDSPEA AAMAYDQAAF  180
AMRGAAAVLN FPADQVRRSL EGVAMDDGAG QGPVLALKRR HSMRRRPASG RNLKAASKGS  240
RSQPEGVMEL EDLGAEYLEE LLGASDSQSP AASWCWSHHS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-25130192163ATERF1
3gcc_A1e-25130192163ATERF1
5wx9_A2e-251351941574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G393200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5839408e-65EF583940.1 Triticum aestivum pathogen-inducible ethylene-responsive element-binding protein (PIEP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559098.11e-114ethylene-responsive transcription factor 1B
TrEMBLA0A0Q3GLJ91e-113A0A0Q3GLJ9_BRADI; Uncharacterized protein
STRINGTraes_5BL_FBC7AF288.12e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-36ethylene response factor 1