PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G002700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 131aa    MW: 13927 Da    PI: 11.4766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G002700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.6e-162168455
                 AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +G+r ++ +grW AeIrdp +   + r++lg+++ta  Aa a++aa ++++g
  Brast03G002700.1.p 21 RGIRKRP-WGRWGAEIRDPAK---KGRVWLGTYDTAHLAALAYDAAVRRIRG 68
                        9******.**********843...59***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.2731976IPR001471AP2/ERF domain
SMARTSM003801.3E-291982IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-192077IPR016177DNA-binding domain
PfamPF008476.9E-102068IPR001471AP2/ERF domain
PRINTSPR003671.1E-82031IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-272176IPR001471AP2/ERF domain
CDDcd000183.56E-262176No hitNo description
PRINTSPR003671.1E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAPKSKSGSA SAAGNRDLRL RGIRKRPWGR WGAEIRDPAK KGRVWLGTYD TAHLAALAYD  60
AAVRRIRGLH AKTNFPLALH PPPAAVQQEV ALRSASSVGS LTEALASLEL TTTPPRVLGL  120
DLNFSPPAEI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-192080667ATERF1
3gcc_A1e-192080667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G002700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024980585.11e-28ethylene-responsive transcription factor 4-like
SwissprotQ9LW493e-25ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A103XLX12e-27A0A103XLX1_CYNCS; AP2/ERF domain-containing protein
STRINGXP_010441914.12e-26(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.16e-18ethylene responsive element binding factor 4