PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G005000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YC

Protein Properties

Length: 236aa MW: 25876 Da PI: 4.8331

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G005000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	123	1.2e-38	75	174	2	97
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l+ fw+++ ie+++++k h+lPlar+kki+ka e+++mi+aeaP +l+ka e+fi eltlrswl++++++rrtl+k+diaaav+r ++ Brast03G005000.1.p 75 LQEFWTERlaeIEHMSELKPHSLPLARVKKIMKASgENMQMIAAEAPGVLAKASEIFIKELTLRSWLQTKDKNRRTLQKNDIAAAVSRDET 165 899*988889*****************863789************************************************ PP NF-YC 89 fdflvdivp 97 fdflvdi+ Brast03G005000.1.p 166 FDFLVDIME 174 ****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.03E-24	71	169	IPR009072	Histone-fold
Pfam	PF00808	4.2E-18	96	160	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.0E-28	97	173	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDEHSQPRAE ADATNVDTPV AHVAAGTVSG AAPAGAVFPA GTVFHIGPHG GPAYAAMPLQ 60 QRLPLQQEDQ HQKVLQEFWT ERLAEIEHMS ELKPHSLPLA RVKKIMKASG ENMQMIAAEA 120 PGVLAKASEI FIKELTLRSW LQTKDKNRRT LQKNDIAAAV SRDETFDFLV DIMEDNGVGF 180 QTTTVQTTVP EMGTFGMYYE NQQPVPFVWS QTEQQQPPYN GEHQQPPSSS GGQDE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-34	85	173	6	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	153	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G005000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571526.1	1e-109	nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	2e-40	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	I1I1W5	1e-108	I1I1W5_BRADI; Uncharacterized protein
STRING	BRADI3G17800.1	1e-107	(Brachypodium distachyon)
STRING	BRADI3G17810.1	1e-109	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20936	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-40	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Brast03G005000.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]