PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G007800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 434aa    MW: 47931.7 Da    PI: 6.0641
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G007800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.41.6e-1793175169
            trihelix   1 rWtkqevlaLiearr........emeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                         +Wt+ +v++Li ++         +        +               kk++W++ s++m+ergf +sp+qC++k+++lnkryk+  e  +
  Brast03G007800.1.p  93 KWTDAMVRLLIMVVYnagpgedaK--------AssssssspapapapGKKGKWRSASQAMAERGFAVSPQQCEDKFNDLNKRYKRAVELLG 175
                         7***********999666664331........112223456667777**************************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-1691174No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MWPQGVLASS AAAMLGLGTG TQQQQQQPVG QQPQYSLFQQ LHGGGFQHHE AQPMAMPAPE  60
GDRHEEEEAI MGAGAGNDDG GVAGPGFVWA RVKWTDAMVR LLIMVVYNAG PGEDAKASSS  120
SSSSPAPAPA PGKKGKWRSA SQAMAERGFA VSPQQCEDKF NDLNKRYKRA VELLGGNPPA  180
RAVLQNPALL DAAIAKLAPA ARELASKLLS PKQLFGFREM CLYHNHKPVK PVAAAALATI  240
TEVEDEEEEG EQQQRGNPKR RRGESSSSKA KGVAEEEEED DPEETDDEDA PLFSAMAVAQ  300
LQGKLDAMGD TEEARRWLQR RAMEVREKLK ACGRRGRELD EHRNRWERFK EAKEREMDAE  360
ELGNLRAHRK LLALKGKEIE RRIAEQKKKK QKQKQPREEV EKATRRSPTD APDAARWEAE  420
LCEAHDEGEH YDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G007800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236469.11e-135uncharacterized protein LOC104584057
TrEMBLA0A2K2CXU21e-130A0A2K2CXU2_BRADI; Uncharacterized protein
STRINGBRADI2G12030.16e-54(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5015622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.15e-26sequence-specific DNA binding transcription factors