PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G008200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 187aa    MW: 19889.4 Da    PI: 9.4765
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G008200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.82.1e-1041318127
                 NAM   8 hPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeek....ewyfFskrdkkyatgkrknra....tksgyWka 85 
                         + +de l v+ L+++  g    +l  +++ +++++++P +L         aee+     ++fFs+ + +  +g  ++ +       g Wka
  Brast03G008200.1.p   4 NAEDERLAVQALARRQLGLLpPPLPFAVHYANVFSSHPAQLYDdfreG--AEEQggygGVFFFSQMACRRGRGPSRSSSssssNGPGQWKA 92 
                         5577888877787776665524454469999**********7423331..22223344669999887766654322222222245899**9 PP

                 NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                            + +++ ++g  vg + tL  y gra +   + W m+ y+
  Brast03G008200.1.p  93 ATGNATIYGSQGGGVGGRMTLLHYGGRAGR---SGWAMDVYS 131
                         9999*****9**************888876...9****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.2271157IPR003441NAC domain
SuperFamilySSF1019413.14E-166157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRMNAEDERL AVQALARRQL GLLPPPLPFA VHYANVFSSH PAQLYDDFRE GAEEQGGYGG  60
VFFFSQMACR RGRGPSRSSS SSSSNGPGQW KAATGNATIY GSQGGGVGGR MTLLHYGGRA  120
GRSGWAMDVY SARGNGIINN QQLLRDPGLR LCRVYWTGLG PPPMTAVREA PPELAGEFGS  180
MCSMGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G008200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756233.12e-76uncharacterized protein LOC106866490
TrEMBLA0A0Q3HPV54e-75A0A0Q3HPV5_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5015722