PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G008700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 235aa    MW: 25425.9 Da    PI: 7.5606
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G008700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-181963147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r+rW +eE+ ++vda  ++G + Wk+I +++g +Rt+ q++s+ qky
  Brast03G008700.1.p 19 RNRWKPEEHNRFVDALSMFGRD-WKKIEAHVG-TRTAIQLRSHAQKY 63
                        89******************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-101461IPR009057Homeodomain-like
PROSITE profilePS5129422.1211468IPR017930Myb domain
SuperFamilySSF466897.48E-151566IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-151866IPR006447Myb domain, plants
SMARTSM007171.9E-121866IPR001005SANT/Myb domain
PfamPF002497.0E-141963IPR001005SANT/Myb domain
CDDcd001671.48E-92164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDRIDETKPA PGTKPKQRRN RWKPEEHNRF VDALSMFGRD WKKIEAHVGT RTAIQLRSHA  60
QKYFEKALKM GVTGLPPPRP KRKRKNSMPV PQQQQQPAQG SSSAGQPQCL PPPGDNSFMG  120
TPSFSSEMSM ALEWAGSSTG STSLASAAVA PPPSSLPEVK TMLPVPGDEA AMDPWDTIMQ  180
EIKDIGLAID MDVDMDMTIF PSITPAGVSE CGSPPPHHGV PGDWCGTNLP SPYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G008700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236464.11e-117protein REVEILLE 8-like
SwissprotQ54IF93e-23MYBG_DICDI; Myb-like protein G
TrEMBLA0A0E0FGG73e-32A0A0E0FGG7_ORYNI; Uncharacterized protein
TrEMBLA2WKV83e-32A2WKV8_ORYSI; Uncharacterized protein
STRINGONIVA01G04110.15e-33(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.12e-19circadian clock associated 1