PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G018200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 204aa    MW: 22420.7 Da    PI: 4.736
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G018200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.29.8e-2649148197
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         f+kv tpsdv+k++rlv+pk++ae+h   +   +   +l +ed          W+++++y+++s++yv+t+GW++Fv++++L +gD++ F+
  Brast03G018200.1.p  49 FDKVVTPSDVGKLNRLVVPKQHAERHfppM--AAAAAELCFEDAAAagattMAWRFRYSYWGSSQSYVITRGWSRFVREKRLSAGDTISFS 137
                         89************************9852..2345578888876667888**************************************** PP

                         E-SSSEE..EEEEE CS
                  B3  84 ldgrsefelvvkvf 97 
                            rs+++++++ +
  Brast03G018200.1.p 138 ---RSGGRYFIGYR 148
                         ...57777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-3245148IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-2347141No hitNo description
SuperFamilySSF1019369.55E-2647154IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.99949151IPR003340B3 DNA binding domain
SMARTSM010193.3E-1749156IPR003340B3 DNA binding domain
PfamPF023621.3E-2249148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MIMEEASAQE RSHEEEEEEE DQELADDGVH YLQQGEAVGG EGGELEHLFD KVVTPSDVGK  60
LNRLVVPKQH AERHFPPMAA AAAELCFEDA AAAGATTMAW RFRYSYWGSS QSYVITRGWS  120
RFVREKRLSA GDTISFSRSG GRYFIGYRHR QPCRRRDIAD AGPAPPRLLP AAAAPRSFRL  180
FGVDVECGTG AGEDDEEGGR ELG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-39461505113B3 domain-containing transcription factor NGA1
5os9_B1e-39461505113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G018200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316233.12e-97putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD51e-49Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A0Q3Q0Z74e-96A0A0Q3Q0Z7_BRADI; Uncharacterized protein
STRINGBRADI3G16500.15e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.12e-35ethylene response DNA binding factor 3