PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G021900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 421aa    MW: 46595.4 Da    PI: 8.8625
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G021900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.51e-09226313297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                         +++r+w ++De+++L  + +f  ++   p    ++f+e v ++++ +  + + + +K+++LK+++  +v+          +++h++   +l
  Brast03G021900.1.p 226 KVRRVWYNKDELLILNEINNFLLQHQRLPEPKENDFFESVLEQLEDDTCDlRSVKDKMKSLKRRYDAHVTA---------TTDHERLLDNL 307
                         679*****************************************99876537889************9999.........78888889999 PP

              DUF573  92 skkiWg 97 
                         s+kiWg
  Brast03G021900.1.p 308 SEKIWG 313
                         999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-10228313IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAGCGGEGES SLLRRRRRAV SARARVLSRQ PQPPSPSLPA GPRHPARRHR RRPISPMQQK  60
RSRKTASGSK GSVVSGSSLV AVEPQIANKP PPPPPKQEAE GSRSDKDRGP TDGAVAGAEE  120
EEEDGDISSS DLEPTPSANS PVVSREDDDE EESPDDGNEV DMQPQGMKRS RSNDAPGANP  180
QPSKKKRDTT SHQPEVPALR QEAEDEEPGS AHQPGERGLC FGKVEKVRRV WYNKDELLIL  240
NEINNFLLQH QRLPEPKEND FFESVLEQLE DDTCDLRSVK DKMKSLKRRY DAHVTATTDH  300
ERLLDNLSEK IWGPRGSNIA GSKNGDKSAL VEAEKKFGEM YPLLTQEVML IADEEPSAKS  360
LCIGLDAEKA LSIEKRLERI KETEKKIQMR MEAKVIAPKA MVRKKLVSLA KKVSKKVRGR  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G021900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571446.10.0probable transcription factor At4g00610
TrEMBLA0A2K2CXI30.0A0A2K2CXI3_BRADI; Uncharacterized protein
TrEMBLI1I1A80.0I1I1A8_BRADI; Uncharacterized protein
STRINGBRADI3G16140.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.13e-07DNA-binding storekeeper protein-related transcriptional regulator