PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G029300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 448aa    MW: 49252.8 Da    PI: 8.8827
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G029300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-10133164334
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                         +++++rr+++NReAAr+sR+RKka+i++Le+ 
  Brast03G029300.1.p 133 KIRKTRRLAQNREAARKSRLRKKAYIQNLETS 164
                         5799*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0036131189IPR004827Basic-leucine zipper domain
PfamPF001705.1E-8133168IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.002133175IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.02E-7134175No hitNo description
Gene3DG3DSA:1.20.5.1706.1E-7135176No hitNo description
PROSITE patternPS000360138153IPR004827Basic-leucine zipper domain
PfamPF141441.1E-26225300IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MELYPGYLED HFSFHRHRGG APAAVVVGRY MPSVAESSSS SSMGTVYDRR HQHHPLHGAG  60
VWAGHMPSPL SGPPGVLHAV RAMELAGPKF EPPSHSQPLE QQQEEEEEDH AVALALPLSP  120
DSSDQDPARP RDKIRKTRRL AQNREAARKS RLRKKAYIQN LETSRMKLAR MEQELTMARQ  180
QHVLCFGRAG TGSPAGLPLR ASFNPGVAAF EVEYARWVEE QGRQTAALRA ALQAATPEPG  240
RLRLLAEAAL AHYDRLFEAK SAAARRDVFF VMSGAWRSPA ERFFLWISGF RPSDLLAVLA  300
PQLEAPPPAL ALTEAQAEEV RRLRRTSRQA EDALSHGLDT LKQSLAESLL LLAPAMAATA  360
EEEAVGFDYA GHGGGNGDGE MGGAMGRLDE LAGFVEQADH LRQQTLRNMY RILTPRQAAR  420
GLLALGEYFG RLRALSELWV KRPREPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G029300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7308999e-69EU730899.1 Brachypodium distachyon clone BAC DH002G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317982.10.0transcription factor HBP-1b(c38) isoform X1
TrEMBLA0A0Q3HP320.0A0A0Q3HP32_BRADI; Uncharacterized protein
STRINGBRADI3G15590.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5014522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.59e-74bZIP family protein