PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G033900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 205aa    MW: 21967.8 Da    PI: 10.6023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G033900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-164796355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr ++ +gr++AeIrd + ng  +r++lg+fg+ae Aa a+++a+++ +g
  Brast03G033900.1.p 47 FIGVRTRP-WGRFAAEIRDSTRNG--ARVWLGTFGSAEAAAMAYDQAALSSRG 96
                        57***999.**********44465..**********************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.7E-2646110IPR001471AP2/ERF domain
PROSITE profilePS5103220.13946104IPR001471AP2/ERF domain
CDDcd000182.80E-1247104No hitNo description
Gene3DG3DSA:3.30.730.101.8E-2547105IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-1947105IPR016177DNA-binding domain
PRINTSPR003672.8E-74758IPR001471AP2/ERF domain
PfamPF008471.8E-114796IPR001471AP2/ERF domain
PRINTSPR003672.8E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MYSSSPSSSD SSFPSELSSS SSRSGGEETT MLEEAPSRRI FKPAMAFIGV RTRPWGRFAA  60
EIRDSTRNGA RVWLGTFGSA EAAAMAYDQA ALSSRGAATP LNFPLARVQD SLRVLALGGA  120
AGSPVLALKQ RHSRRTRRKK ADIILSAVSG RKKQQQSCTN NNSSMAAAGK KAGEQKRFIL  180
ELEDLGTDYL EELLRVSELM CTAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2247105361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-2247105664ATERF1
3gcc_A7e-2247105664ATERF1
5wx9_A2e-21471041572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G033900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571392.27e-84ethylene-responsive transcription factor 15
TrEMBLA0A2K2CX696e-81A0A2K2CX69_BRADI; Uncharacterized protein
STRINGEMT243424e-47(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-28ethylene response factor 1