PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G042700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SRS
Protein Properties Length: 371aa    MW: 40793.9 Da    PI: 8.094
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G042700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70222.53.1e-075791539
              DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39
                        + +C +CGn a+  C ++ C+ CC      C+ hv
  Brast03G042700.1.p 57 KPKCIQCGNVARSRCPFQCCKSCCYKAQNPCHIHV 91
                        568*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-45991IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAASSPASSG KAASDTSTPA PAPTPAPAVA NGNGTPQKPP PGTGFDMPKP NLRGLNKPKC  60
IQCGNVARSR CPFQCCKSCC YKAQNPCHIH VLKQNNTLPE KTPPTPAPSA DQPSTNSPLN  120
GSSSRLSSLQ KLPHHFLNSL RTRKSLAKKD VASINKWRFM KLEEHIQGDI DVENEAYDRY  180
TQNIGLLEET FYLTEDAAGE HETEATSSEE RMEIMVSEAK VRLKSDCSNA DGFKERIATI  240
LDQKLKELQG RGYEDDKPSD QNLDDHRKPV KLSIKQQMER NMKTNELLGK LTKAQSEDDL  300
RPCLGIMAQL FGKENSSSMV TSNKSSSQES TPAITPSYSF PKRMTRLEFD ENMSSKINDE  360
FSSLSQVARL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G042700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573337.10.0uncharacterized protein LOC100823491
TrEMBLI1I0N80.0I1I0N8_BRADI; Uncharacterized protein
STRINGBRADI3G14240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP737555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.12e-63