PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G050900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 25855.7 Da    PI: 6.3655
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G050900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.21.2e-241056248
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                        rien   rqvtf+kRr+g+lKKA ELSvLCda++ +i+fs +gkly+
  Brast03G050900.2.p 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDADIGIIVFSAHGKLYD 56
                        8********************************************97 PP
2K-box38.16.4e-14931731899
               K-box  18 qqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         +qe+  Lk+ei+ Lq+ +R + G+  + ++s++eL+ Le+ Le  + +iRs K  +++++i+ l+ ke++l+ +n+ L++k+ 
  Brast03G050900.2.p  93 KQEAMVLKQEIDLLQKGLRFIYGNRANeQMSVEELNALERYLEIWMFNIRSAK--IMIQEIQALKSKEDMLKAANEILQEKIV 173
                         79*********************998537**********************87..8*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.534161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-27175IPR002100Transcription factor, MADS-box
CDDcd002651.40E-38276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.07489178IPR002487Transcription factor, K-box
PfamPF014862.7E-1791172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD ADIGIIVFSA HGKLYDLATT  60
GTMDGLIERY KSASGGEGSM QADGFGDHRM DPKQEAMVLK QEIDLLQKGL RFIYGNRANE  120
QMSVEELNAL ERYLEIWMFN IRSAKIMIQE IQALKSKEDM LKAANEILQE KIVEQHGLVG  180
QQGLIDIGMT IADQQNGHFS TDPLIEEITN PLTILSGYST CRSSEMGYSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16170169MEF2C
5f28_B3e-16170169MEF2C
5f28_C3e-16170169MEF2C
5f28_D3e-16170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G050900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693190.0KF469319.1 Brachypodium distachyon MADS-box transcription factor 24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288326.11e-166MADS-box transcription factor 26-like
SwissprotA2YQK91e-141MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-141MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLI1I0F71e-164I1I0F7_BRADI; MADS-box transcription factor 24
STRINGBRADI3G13570.11e-165(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.16e-61AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]